Links to Snake Genomic Data
 
 
Low Coverage Snake Shotgun Genome Sampling Using 454 Sequencing (454 SFF files - also submitted to the NCBI Sequence Read Archive) Agkistrodon contortrix: ~60 Mbp of 454 shotgun genomic sampling - Aco_Shotgun.zip Python molurus: ~30 Mbp of 454 shotgun - Pmo_shotgun.zip citation: Castoe et al., [In Press]. Genome Biology and Evolution Micrurus fulvius: ~7.7 Mbp of 454 shotgun genomic sampling - Mfl_454.fna.zip Micrurus fulvius: Microsatellite-containing reads - Mfl_454_microsat.fasta.zip citation: Castoe et al., [Submitted]. Molecular Ecology Resources cDNA transcriptome data (from 454 cDNA sequencing) (454 SFF files - also submitted to the NCBI Sequence Read Archive) LIVER TISSUE Agkistrodon contortrix: 454 cDNA sequencing of Liver tissue Aco_Liver_cDNA.zip Python molurus: 454 cDNA sequencing of Liver tissue Pmo_Liver_cDNA.zip citation: Castoe et al., [In Press]. Genome Biology and Evolution Other_Data_files/Aco_Shotgun.zipOther_Data_files/Pmo_shotgun.zipOther_Data_files/Mfl_454.fna.zipOther_Data_files/Mfl_454_microsat.fasta.zipOther_Data_files/Aco_Liver_cDNA.zipOther_Data_files/Pmo_Liver_cDNA.zipshapeimage_2_link_0shapeimage_2_link_1shapeimage_2_link_2shapeimage_2_link_3shapeimage_2_link_4shapeimage_2_link_5
Snake de novo Repeat Element Libraries, from RepeatModeler analyses (based on low coverage 454 shotgun sampling, provided in fasta format) Agkistrodon contortrix: RepeatModeler library, classified using RepClass agk.12comb.classified.annotated.fixed.txt Python molurus: RepeatModeler library, classified using RepClass pyth.consensi.fa.classified.annotated.fixed Combined Agkistrodon and Python RepeatModeler library, classified using RepClass agk1n2_python.annotated.ple_fix Agkistrodon and Python Bov-B and SNAKE1 CR1 LINE element consensus sequences LINE_Consensus_Seqs.txt citation: Castoe et al., [In Press]. Genome Biology and Evolution Burmese python transcriptome assembly (Liver and Heart tissue cDNA libraries sequenced via 454) Assembled Contig fastas AllPythonData_coAssembly.fna Annotation table updated_cDNA_blast_table.csv citation: Castoe et al., [In Review]. BMC Research Notes Other_Data_files/agk.12comb.classified.annotated.fixed.txtOther_Data_files/pyth.consensi.fa.classified.annotated.fixedOther_Data_files/agk1n2_python.annotated.ple_fixOther_Data_files/TE_Consensus_Seqs_4Genbank.txtOther_Data_files/AllPythonData_coAssembly.fnaOther_Data_files/updated_cDNA_blast_table.csvshapeimage_5_link_0shapeimage_5_link_1shapeimage_5_link_2shapeimage_5_link_3shapeimage_5_link_4shapeimage_5_link_5